STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW60024.1Hypothetical protein. (430 aa)    
Predicted Functional Partners:
SFW60034.1
Helix-turn-helix domain-containing protein.
 
     0.785
SFW60016.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.671
SFW88976.1
PTS system N-acetylglucosamine-specific IIA component, Glc family.
    
   0.628
SFW60005.1
Hypothetical protein.
       0.613
SFW58864.1
Cupin domain-containing protein.
  
    0.485
SFW60042.1
Hypothetical protein.
       0.480
SFW89890.1
Hypothetical protein.
  
     0.469
SFW92281.1
Putative transmembrane protein (PGPGW).
  
     0.446
SFW68396.1
Saccharopine dehydrogenase NADP binding domain-containing protein.
  
     0.434
SFW92634.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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