STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW62780.1Iron (metal) dependent repressor, DtxR family; Manually curated. (227 aa)    
Predicted Functional Partners:
SFW53791.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.762
SFW84553.1
LysR family transcriptional regulator, chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
   
   0.703
SFW59778.1
Zinc/manganese transport system permease protein.
  
 
 0.697
metN
D-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.679
SFW59759.1
Zinc/manganese transport system substrate-binding protein.
  
 
 0.668
SFW72178.1
DNA-binding transcriptional regulator, HxlR family.
   
    0.668
SFW72275.1
DNA-binding transcriptional regulator, HxlR family.
   
    0.668
SFW91820.1
DNA-binding transcriptional regulator, HxlR family.
   
    0.668
SFW62772.1
Ribosomal protein S18 acetylase RimI.
       0.666
SFW92014.1
Regulatory protein, luxR family.
   
   0.647
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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