Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFW65550.1 | SFW65564.1 | SAMN04489730_2501 | SAMN04489730_2503 | Hypothetical protein. | Hypothetical protein. | 0.811 |
SFW65550.1 | ispH | SAMN04489730_2501 | SAMN04489730_2504 | Hypothetical protein. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.489 |
SFW65550.1 | xseA | SAMN04489730_2501 | SAMN04489730_2502 | Hypothetical protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.847 |
SFW65550.1 | xseB | SAMN04489730_2501 | SAMN04489730_2500 | Hypothetical protein. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.857 |
SFW65564.1 | SFW65550.1 | SAMN04489730_2503 | SAMN04489730_2501 | Hypothetical protein. | Hypothetical protein. | 0.811 |
SFW65564.1 | ispH | SAMN04489730_2503 | SAMN04489730_2504 | Hypothetical protein. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.602 |
SFW65564.1 | xseA | SAMN04489730_2503 | SAMN04489730_2502 | Hypothetical protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.871 |
SFW65564.1 | xseB | SAMN04489730_2503 | SAMN04489730_2500 | Hypothetical protein. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.870 |
SFW72825.1 | SFW74004.1 | SAMN04489730_3509 | SAMN04489730_3691 | Aminopeptidase N. | DNA polymerase III, delta subunit. | 0.614 |
SFW72825.1 | SFW89373.1 | SAMN04489730_3509 | SAMN04489730_7225 | Aminopeptidase N. | Protein of unknown function. | 0.691 |
SFW72825.1 | rbpA-2 | SAMN04489730_3509 | SAMN04489730_5402 | Aminopeptidase N. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.649 |
SFW72825.1 | rpoZ | SAMN04489730_3509 | SAMN04489730_7090 | Aminopeptidase N. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.599 |
SFW72825.1 | xseB | SAMN04489730_3509 | SAMN04489730_2500 | Aminopeptidase N. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.748 |
SFW74004.1 | SFW72825.1 | SAMN04489730_3691 | SAMN04489730_3509 | DNA polymerase III, delta subunit. | Aminopeptidase N. | 0.614 |
SFW74004.1 | SFW89373.1 | SAMN04489730_3691 | SAMN04489730_7225 | DNA polymerase III, delta subunit. | Protein of unknown function. | 0.749 |
SFW74004.1 | rbpA-2 | SAMN04489730_3691 | SAMN04489730_5402 | DNA polymerase III, delta subunit. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.761 |
SFW74004.1 | rpoZ | SAMN04489730_3691 | SAMN04489730_7090 | DNA polymerase III, delta subunit. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.639 |
SFW74004.1 | xseB | SAMN04489730_3691 | SAMN04489730_2500 | DNA polymerase III, delta subunit. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.708 |
SFW89373.1 | SFW72825.1 | SAMN04489730_7225 | SAMN04489730_3509 | Protein of unknown function. | Aminopeptidase N. | 0.691 |
SFW89373.1 | SFW74004.1 | SAMN04489730_7225 | SAMN04489730_3691 | Protein of unknown function. | DNA polymerase III, delta subunit. | 0.749 |
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