STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW66623.1Polyhydroxyalkanoate synthase. (351 aa)    
Predicted Functional Partners:
SFW66805.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
     
 0.922
SFW72579.1
acetoacetyl-CoA reductase.
   
 
 0.770
SFW66617.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.680
SFW89306.1
3-hydroxyacyl-CoA dehydrogenase.
     
 0.670
SFW14466.1
Poly(3-hydroxybutyrate) depolymerase.
    
 0.650
SFW46878.1
MaoC like domain-containing protein.
    
 0.604
SFW67037.1
Acyl dehydratase.
    
 0.532
SFW79905.1
Acyl dehydratase.
    
 0.532
SFW80111.1
Acyl dehydratase.
    
 0.532
SFW88672.1
Acyl dehydratase.
    
 0.532
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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