STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW69584.1DNA-binding transcriptional regulator YbjK. (192 aa)    
Predicted Functional Partners:
SFW69575.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.566
SFW92502.1
Predicted membrane protein.
   
    0.502
SFW92504.1
Predicted membrane protein.
   
    0.502
SFW69594.1
Rieske 2Fe-2S family protein.
       0.493
SFW90712.1
Hypothetical protein.
   
    0.479
SFW91161.1
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.470
SFW57184.1
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.463
SFW69545.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.457
SFW54732.1
AAA ATPase domain-containing protein.
   
    0.455
SFW62780.1
Iron (metal) dependent repressor, DtxR family; Manually curated.
   
    0.455
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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