STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW71223.1ABC-2 type transport system permease protein. (283 aa)    
Predicted Functional Partners:
SFW71230.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.960
SFW71216.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
     0.922
SFW62296.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.592
SFW71258.1
Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase; Belongs to the precorrin methyltransferase family.
       0.570
SFW71250.1
precorrin-8X methylmutase.
       0.543
SFW71236.1
Hypothetical protein.
       0.542
SFW71242.1
precorrin-3B synthase; Manually curated.
       0.542
SFW90945.1
ABC transporter efflux protein, DrrB family.
 
  
  0.530
SFW62290.1
ABC-2 type transport system permease protein.
  
  
 
0.476
SFW53105.1
ABC-2 type transport system permease protein.
  
  
  0.473
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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