STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW74724.1Phosphoglycolate phosphatase, HAD superfamily. (237 aa)    
Predicted Functional Partners:
SFW91410.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.766
SFW56001.1
Glycolate oxidase.
    
  0.764
SFW66911.1
Glycolate oxidase.
    
  0.764
SFW74730.1
Helix-turn-helix domain-containing protein.
 
     0.682
SFW90876.1
Phosphoglycolate phosphatase, HAD superfamily.
  
  
 
0.677
SFW91699.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.643
SFW85338.1
L-lactate dehydrogenase complex protein LldE.
    
  0.605
SFW85894.1
FAD/FMN-containing dehydrogenase.
 
  
 0.602
SFW65426.1
IMP dehydrogenase.
    
  0.595
SFW72447.1
Glycolate oxidase.
    
  0.595
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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