STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW77667.1Proprotein convertase P-domain-containing protein. (956 aa)    
Predicted Functional Partners:
SFW92454.1
Ferredoxin.
  
     0.698
SFW51618.1
Protein of unknown function.
  
     0.568
SFW91968.1
Hypothetical protein.
  
  
  0.566
SFW73499.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.563
SFW88035.1
Hypothetical protein.
  
     0.551
SFW77661.1
dGTPase; Belongs to the dGTPase family. Type 2 subfamily.
 
     0.545
SFW77672.1
Hypothetical protein.
       0.526
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
  
     0.516
SFW76298.1
NACHT domain-containing protein.
  
     0.509
SFW83393.1
Hypothetical protein.
  
     0.502
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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