STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW78485.1DNA-binding transcriptional regulator, AcrR family. (204 aa)    
Predicted Functional Partners:
SFW43705.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
     0.633
SFW82810.1
Acetyltransferase (GNAT) family protein.
  
     0.608
SFW43465.1
Hypothetical protein.
  
     0.498
SFW71852.1
Pyridoxamine 5'-phosphate oxidase.
  
     0.484
SFW85817.1
Hypothetical protein.
  
     0.471
SFW65458.1
Ig-like domain-containing protein.
  
     0.425
SFW85411.1
Methyltransferase domain-containing protein.
  
 
   0.420
SFW58864.1
Cupin domain-containing protein.
  
     0.410
SFW78492.1
Predicted arabinose efflux permease, MFS family.
       0.410
SFW68911.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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