STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW83365.15-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (502 aa)    
Predicted Functional Partners:
SFW83373.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
  0.952
SFW83347.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
 
 0.907
dapA-2
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
  0.851
SFW83353.1
DNA-binding transcriptional regulator, GntR family.
 
  
  0.843
SFW71419.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.690
SFW90337.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.690
SFW89171.1
L-proline dehydrogenase.
 
 0.674
SFW75705.1
Acyl transferase domain-containing protein.
  
 0.665
SFW88511.1
Acyl transferase domain-containing protein.
  
 0.665
SFW89293.1
Urea carboxylase.
   
 
 0.659
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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