STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW84656.1Stage II sporulation protein E (SpoIIE). (469 aa)    
Predicted Functional Partners:
SFW87448.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.881
SFW84653.1
GAF domain-containing protein.
 
  
  0.854
SFW87437.1
PAS domain S-box-containing protein.
 
 0.816
SFW85203.1
Histidine kinase-like ATPase domain-containing protein; Non-canonical start codon; manually curated.
 
 0.790
SFW87432.1
GAF domain-containing protein.
 
 0.762
SFW81010.1
Histidine kinase-like ATPase domain-containing protein.
 
  0.627
SFW49256.1
Hypothetical protein.
  
     0.626
SFW87008.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
  0.623
SFW92143.1
Histidine kinase-like ATPase domain-containing protein.
 
  0.616
SFW84153.1
Anti-anti-sigma factor.
  
  0.608
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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