STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW85285.1Regulatory protein, luxR family. (907 aa)    
Predicted Functional Partners:
SFW73322.1
Signal transduction histidine kinase.
   
 0.931
SFW87448.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
   
 0.898
SFW91606.1
Hypothetical protein.
  
 0.824
SFW65170.1
Transcriptional regulatory protein, C terminal.
 
0.788
SFW87437.1
PAS domain S-box-containing protein.
 
 
 0.781
SFW65164.1
Transcriptional regulatory protein, C terminal.
 
0.768
SFW75852.1
Regulatory protein, luxR family.
  
 
0.720
SFW49219.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.716
SFW74570.1
Regulatory protein, luxR family.
  
  0.712
SFW88586.1
Regulatory protein, luxR family.
  
 
0.712
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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