STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW87343.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
SFW68368.1
Hypothetical protein.
  
     0.768
SFW85063.1
Nuclease-related domain-containing protein.
  
     0.762
SFW76506.1
PPE family protein.
  
     0.759
SFW57740.1
Hypothetical protein.
  
     0.752
SFW48107.1
Hypothetical protein.
  
     0.748
SFW49274.1
Hypothetical protein.
  
     0.738
SFW87341.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
       0.737
SFW76512.1
EspG family protein.
  
     0.732
SFW81659.1
Hypothetical protein.
  
     0.731
SFW50839.1
EspG family protein.
  
     0.729
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.