Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFW54034.1 | SFW88342.1 | SAMN04489730_1283 | SAMN04489730_6930 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | CHC2 zinc finger. | 0.975 |
SFW54034.1 | polA | SAMN04489730_1283 | SAMN04489730_6909 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.781 |
SFW54034.1 | sigA | SAMN04489730_1283 | SAMN04489730_7229 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.527 |
SFW54505.1 | SFW88342.1 | SAMN04489730_1329 | SAMN04489730_6930 | Dynamin family protein. | CHC2 zinc finger. | 0.680 |
SFW87132.1 | SFW88342.1 | SAMN04489730_6600 | SAMN04489730_6930 | RNA polymerase sigma factor, sigma-70 family. | CHC2 zinc finger. | 0.581 |
SFW88342.1 | SFW54034.1 | SAMN04489730_6930 | SAMN04489730_1283 | CHC2 zinc finger. | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.975 |
SFW88342.1 | SFW54505.1 | SAMN04489730_6930 | SAMN04489730_1329 | CHC2 zinc finger. | Dynamin family protein. | 0.680 |
SFW88342.1 | SFW87132.1 | SAMN04489730_6930 | SAMN04489730_6600 | CHC2 zinc finger. | RNA polymerase sigma factor, sigma-70 family. | 0.581 |
SFW88342.1 | SFW92010.1 | SAMN04489730_6930 | SAMN04489730_8317 | CHC2 zinc finger. | Hypothetical protein. | 0.680 |
SFW88342.1 | der | SAMN04489730_6930 | SAMN04489730_6765 | CHC2 zinc finger. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.680 |
SFW88342.1 | grpE | SAMN04489730_6930 | SAMN04489730_1425 | CHC2 zinc finger. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.639 |
SFW88342.1 | guaB | SAMN04489730_6930 | SAMN04489730_0483 | CHC2 zinc finger. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.619 |
SFW88342.1 | polA | SAMN04489730_6930 | SAMN04489730_6909 | CHC2 zinc finger. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.798 |
SFW88342.1 | rph | SAMN04489730_6930 | SAMN04489730_2857 | CHC2 zinc finger. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.875 |
SFW88342.1 | sigA | SAMN04489730_6930 | SAMN04489730_7229 | CHC2 zinc finger. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.581 |
SFW92010.1 | SFW88342.1 | SAMN04489730_8317 | SAMN04489730_6930 | Hypothetical protein. | CHC2 zinc finger. | 0.680 |
der | SFW88342.1 | SAMN04489730_6765 | SAMN04489730_6930 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | CHC2 zinc finger. | 0.680 |
grpE | SFW88342.1 | SAMN04489730_1425 | SAMN04489730_6930 | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | CHC2 zinc finger. | 0.639 |
grpE | polA | SAMN04489730_1425 | SAMN04489730_6909 | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.468 |
guaB | SFW88342.1 | SAMN04489730_0483 | SAMN04489730_6930 | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | CHC2 zinc finger. | 0.619 |
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