STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW91869.1Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (574 aa)    
Predicted Functional Partners:
SFW91870.1
Uncharacterized membrane protein, DUF485 family.
 
  
 0.939
SFW51874.1
Uncharacterized membrane protein, DUF485 family.
 
  
 0.854
SFW91867.1
DNA-binding response regulator, LytR/AlgR family.
 
     0.839
SFW91866.1
Two-component system, LytT family, sensor kinase.
 
     0.817
SFW89813.1
Uncharacterized membrane protein, DUF485 family.
 
  
 0.812
SFW91868.1
Hypothetical protein.
 
     0.800
SFW91871.1
Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    
0.707
SFW51909.1
DNA-binding response regulator, LytR/AlgR family.
 
     0.635
SFW51933.1
Two-component system, LytT family, sensor kinase.
 
     0.594
SFW51898.1
Hypothetical protein.
 
     0.542
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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