STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW92047.1RHS repeat-associated core domain-containing protein. (1057 aa)    
Predicted Functional Partners:
SFW90495.1
Hypothetical protein.
  
 
 0.677
SFW85811.1
Hypothetical protein.
  
     0.628
SFW83592.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.551
SFW92045.1
Hypothetical protein.
       0.523
SFW60265.1
YD repeat-containing protein.
  
     0.496
SFW62622.1
Metallophosphoesterase, PPA1498 family.
  
     0.495
SFW89026.1
Hypothetical protein.
  
     0.466
SFW45931.1
Type VII secretion integral membrane protein EccD.
   
    0.461
SFW90492.1
Type VII secretion integral membrane protein EccD.
   
    0.461
SFW77391.1
Hypothetical protein.
 
 
 0.460
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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