Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACO45548.1Putative phage protein D. (590 aa)    
Predicted Functional Partners:
ACO45547.1
Hypothetical protein.
 
    0.963
ACO45549.2
Putative AAA ATPase.
 
     0.949
ACO45544.1
Hypothetical protein.
 
   
 0.937
ACO45545.1
Putative forkhead associated domain protein.
 
     0.935
ACO45543.1
Putative GPW/gp25 family.
 
  
 0.917
ACO45542.1
Hypothetical protein.
 
     0.871
ACO45541.1
Putative phage tail sheath protein.
 
   
 0.860
ACO45540.1
Hypothetical protein.
 
  
 0.858
ACO45538.1
Hypothetical protein.
 
  
 0.857
ACO45536.1
Hypothetical protein.
 
   
 0.836
Your Current Organism:
Deinococcus deserti
NCBI taxonomy Id: 546414
Other names: D. deserti VCD115, Deinococcus deserti VCD115, Deinococcus deserti str. VCD115, Deinococcus deserti strain VCD115
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