STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tilSPutative tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (533 aa)    
Predicted Functional Partners:
ACO46947.2
Putative bifunctional protein BirA: biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase.
  
  
 0.912
hisI
Putative histidine biosynthesis bifunctional protein hisIE; In the N-terminal section; belongs to the PRA-CH family.
  
  
 0.828
truA
Putative tRNA-pseudouridine synthase I (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase); Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
 
 0.811
ACO46362.1
Putative Hypoxanthine phosphoribosyltransferase (Hypoxanthine-guanine phosphoribosyltransferase)(HGPRTase); Belongs to the purine/pyrimidine phosphoribosyltransferase family.
 
  
 0.784
ACO47286.1
Putative Cytidine/deoxycytidylate deaminase, zinc-binding region (CMP/dCMP deaminase, zinc-binding).
 
  
 0.772
ACO45782.1
Putative peroxiredoxin.
       0.733
ACO45500.1
Putative ATP-dependent DNA helicase.
  
 
 0.724
guaA
Putative GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.722
metG
Putative Methionine--tRNA ligase (Methionyl-tRNA synthetase) (MetRS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
  
 0.711
ACO47285.1
Putative NUDIX hydrolase/O-methyltransferase domains protein.
  
  
 0.701
Your Current Organism:
Deinococcus deserti
NCBI taxonomy Id: 546414
Other names: D. deserti VCD115, Deinococcus deserti VCD115, Deinococcus deserti str. VCD115, Deinococcus deserti strain VCD115
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