Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACO45805.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
ACO45804.1
Hypothetical protein.
       0.805
ACO45806.1
Putative Threonine aldolase.
       0.574
ACO45807.1
Conserved hypothetical protein.
       0.566
ACO45808.1
Hypothetical protein.
       0.566
ACO45802.2
Putative FAD dependent oxidoreductase.
       0.543
ACO45803.1
Conserved hypothetical protein, precursor.
       0.543
ACO45809.1
Conserved hypothetical protein.
       0.441
ACO45801.1
Putative 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH).
       0.426
Your Current Organism:
Deinococcus deserti
NCBI taxonomy Id: 546414
Other names: D. deserti VCD115, Deinococcus deserti VCD115, Deinococcus deserti str. VCD115, Deinococcus deserti strain VCD115
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