STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO46169.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
ACO46168.1
Hypothetical protein.
       0.840
ACO46170.1
Putative Roadblock/LC7 domain protein.
       0.840
ACO46749.1
Putative gliding motility protein, putative Ras-like GTPase.
  
 
 0.794
ACO46167.1
Putative Porphobilinogen synthase (Delta-aminolevulinic acid dehydratase); Belongs to the ALAD family.
       0.611
ACO46166.1
Hypothetical protein.
       0.602
gyrA
Putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A) (DNA topoisomerase II); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break an [...]
       0.489
Your Current Organism:
Deinococcus deserti
NCBI taxonomy Id: 546414
Other names: D. deserti VCD115, Deinococcus deserti VCD115, Deinococcus deserti str. VCD115, Deinococcus deserti strain VCD115
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