Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACO46447.1Conserved hypothetical protein, precursor. (163 aa)    
Predicted Functional Partners:
opdA
Putative Oligopeptidase A.
 
     0.708
ACO47253.1
Conserved hypothetical protein, precursor.
 
     0.570
ACO45291.1
Hypothetical protein.
  
     0.540
ACO46544.1
Putative Transcriptional regulator, MarR family.
  
     0.533
ACO46449.2
Putative N-acetyltransferase.
 
     0.490
ACO45010.1
Conserved hypothetical protein, precursor.
 
     0.467
ACO45009.1
Conserved hypothetical protein, precursor.
  
     0.449
ACO45388.2
Hypothetical protein.
  
     0.449
Your Current Organism:
Deinococcus deserti
NCBI taxonomy Id: 546414
Other names: D. deserti VCD115, Deinococcus deserti VCD115, Deinococcus deserti str. VCD115, Deinococcus deserti strain VCD115
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