Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACO46509.1Putative LysM lysin domain protein, precursor. (442 aa)    
Predicted Functional Partners:
rbfA
Putative Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.735
ACO46507.1
Putative 4-hydroxybenzoyl-CoA thioesterase.
  
    0.715
ACO46506.1
Putative NUDIX hydrolase.
       0.651
ACO46511.1
Putative von Willebrand factor type A domain protein, precursor.
       0.598
ACO46510.1
Conserved hypothetical protein, precursor; putative membrane protein.
       0.556
ACO46500.1
Hypothetical protein.
  
   0.501
ACO45368.1
Putative glycosyltransferase.
  
  
 0.445
dnaE
Putative DNA-directed DNA polymerase (DNA polymerase III, alpha subunit).
     
 0.423
cinA
Putative CinA-like protein; Belongs to the CinA family.
 
     0.417
ACO46501.1
Putative histidine kinase, classic; putative membrane protein.
 
    0.402
Your Current Organism:
Deinococcus deserti
NCBI taxonomy Id: 546414
Other names: D. deserti VCD115, Deinococcus deserti VCD115, Deinococcus deserti str. VCD115, Deinococcus deserti strain VCD115
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