STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v012196Putative ADP-ribosylation factor-binding protein. (640 aa)    
Predicted Functional Partners:
ARF6
ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
    
 0.955
crp-79
Ubiquitin-60S ribosomal protein L40.
    
   0.846
chc1
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.834
ARF
ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
    
 0.821
CTRI78_v009634
ENTH domain-containing protein.
    
 
 0.806
radR-1
Transcription factor radR.
    
   0.773
CTRI78_v011763
CIA30 domain-containing protein.
    
   0.773
ubi::crp-6
Ubiquitin-40S ribosomal protein S27a.
    
   0.773
ypt4
GTP-binding protein ypt4.
    
 0.739
CTRI78_v003386
TBC domain-containing protein.
    
  0.670
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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