STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v011564GH131_N domain-containing protein. (322 aa)    
Predicted Functional Partners:
NUP152
Nucleoporin NUP152.
    
 0.768
swd1
Set1 complex component swd1.
    
 0.651
ash2
Set1 complex component ash2.
    
 0.649
NUP133
Nucleoporin NUP133.
    
  0.625
NUP49
Nucleoporin NUP49.
    
 0.623
ATG1
Serine/threonine-protein kinase ATG1.
    
 0.614
nup-20
Protein transport protein sec13; Belongs to the WD repeat SEC13 family.
    
 0.613
SET1
Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.
    
 0.598
SEH1
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
  0.597
crp-79
Ubiquitin-60S ribosomal protein L40.
    
  0.589
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.