STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v011448OV-16 antigen. (296 aa)    
Predicted Functional Partners:
CTRI78_v003921
54S ribosomal protein RML2.
   
   0.712
CTRI78_v008356
37S ribosomal protein MRP4.
   
   0.692
CTRI78_v000835
14-3-3 protein-like protein; Belongs to the 14-3-3 family.
    
 0.689
CTRI78_v006962
14-3-3 protein-like protein; Belongs to the 14-3-3 family.
    
 0.689
CTRI78_v002824
Uncharacterized protein.
   
 
 0.674
CTRI78_v005537
37S ribosomal protein S23.
   
 
 0.663
CTRI78_v000558
37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
   0.659
CTRI78_v005016
54S ribosomal protein yml6.
   
 
 0.658
rpsO
30S ribosomal protein S15.
   
   0.655
CTRI78_v008974
54S ribosomal protein L3.
   
 
 0.650
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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