STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc6a1-0Sodium-and chloride-dependent GABA transporter 1. (678 aa)    
Predicted Functional Partners:
SLC1A1
Amino acid transporter.
    
 0.686
psy1
Syntaxin-like protein psy1.
    
 0.669
SSO2
Protein transport protein SSO2.
    
 0.669
CTRI78_v008186
Uncharacterized protein.
    
 0.521
CTRI78_v004787
Uncharacterized protein.
    
 0.521
CTRI78_v003430
Uncharacterized protein.
    
 0.521
new16
Cytochrome c oxidase subunit 6B-like protein new16.
    
  0.466
cox12
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
    
  0.466
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.