CTRI78_v010487 protein (Colletotrichum trifolii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTRI78_v010487

Uncharacterized protein. (232 aa)

Predicted Functional Partners:

CTRI78_v009548

0.608

CTRI78_v008137

0.584

trp-3

0.583

CTRI78_v007019

0.575

CTRI78_v010297

0.572

STRAP

0.552

CTRI78_v011142

0.520

CTRI78_v011141

0.520

new16

0.514

cox12

0.514

Your Current Organism:

Colletotrichum trifolii

NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTRI78_v007019	CTRI78_v008137	A0A4V3HVU5	A0A4R8QX19	Cytochrome c oxidase subunit 6.	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	0.999
CTRI78_v007019	CTRI78_v009548	A0A4V3HVU5	A0A4R8R0M8	Cytochrome c oxidase subunit 6.	Uncharacterized protein.	0.999
CTRI78_v007019	CTRI78_v010297	A0A4V3HVU5	A0A4R8QSP2	Cytochrome c oxidase subunit 6.	Cytochrome c oxidase polypeptide 5.	0.999
CTRI78_v007019	CTRI78_v010487	A0A4V3HVU5	A0A4R8QL60	Cytochrome c oxidase subunit 6.	Uncharacterized protein.	0.575
CTRI78_v007019	CTRI78_v011141	A0A4V3HVU5	A0A4R8QSA7	Cytochrome c oxidase subunit 6.	Cytochrome c oxidase subunit 4.	0.999
CTRI78_v007019	CTRI78_v011142	A0A4V3HVU5	A0A4R8QNN1	Cytochrome c oxidase subunit 6.	Uncharacterized protein.	0.998
CTRI78_v007019	cox12	A0A4V3HVU5	A0A4R8RRW5	Cytochrome c oxidase subunit 6.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.999
CTRI78_v007019	new16	A0A4V3HVU5	A0A4R8RCV6	Cytochrome c oxidase subunit 6.	Cytochrome c oxidase subunit 6B-like protein new16.	0.996
CTRI78_v008137	CTRI78_v007019	A0A4R8QX19	A0A4V3HVU5	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase subunit 6.	0.999
CTRI78_v008137	CTRI78_v009548	A0A4R8QX19	A0A4R8R0M8	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.999
CTRI78_v008137	CTRI78_v010297	A0A4R8QX19	A0A4R8QSP2	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase polypeptide 5.	0.999
CTRI78_v008137	CTRI78_v010487	A0A4R8QX19	A0A4R8QL60	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.584
CTRI78_v008137	CTRI78_v011141	A0A4R8QX19	A0A4R8QSA7	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase subunit 4.	0.998
CTRI78_v008137	CTRI78_v011142	A0A4R8QX19	A0A4R8QNN1	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.998
CTRI78_v008137	cox12	A0A4R8QX19	A0A4R8RRW5	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.999
CTRI78_v008137	new16	A0A4R8QX19	A0A4R8RCV6	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase subunit 6B-like protein new16.	0.993
CTRI78_v009548	CTRI78_v007019	A0A4R8R0M8	A0A4V3HVU5	Uncharacterized protein.	Cytochrome c oxidase subunit 6.	0.999
CTRI78_v009548	CTRI78_v008137	A0A4R8R0M8	A0A4R8QX19	Uncharacterized protein.	Cytochrome c oxidase subunit 6A; Belongs to the cytochrome c oxidase subunit 6A family.	0.999
CTRI78_v009548	CTRI78_v010297	A0A4R8R0M8	A0A4R8QSP2	Uncharacterized protein.	Cytochrome c oxidase polypeptide 5.	0.999
CTRI78_v009548	CTRI78_v010487	A0A4R8R0M8	A0A4R8QL60	Uncharacterized protein.	Uncharacterized protein.	0.608