STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v010295Uncharacterized protein. (440 aa)    
Predicted Functional Partners:
ssr2
SWI/SNF and RSC complexes subunit ssr2.
    
 0.721
ARP4
Actin-related protein 4; Belongs to the actin family.
    
 0.721
ssr3
SWI/SNF and RSC complexes subunit ssr3.
    
 0.720
sfh1
Chromatin structure-remodeling complex subunit sfh1.
    
 0.718
spp27
Upstream activation factor subunit spp27.
    
 0.667
RSC1
Chromatin structure-remodeling complex subunit RSC1.
    
 0.665
rsc1
Chromatin structure-remodeling complex subunit rsc1.
    
 0.665
CTRI78_v002688
Uncharacterized protein.
    
 0.648
snf5
SWI/SNF chromatin-remodeling complex subunit snf5.
    
 0.648
CTRI78_v004235
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
    
  0.596
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.