STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v010507Uncharacterized protein. (179 aa)    
Predicted Functional Partners:
gcs-1
Glutamate--cysteine ligase.
   
 0.969
CTRI78_v010509
Cysteine desulfurase.
 
   
  0.843
trp-3
Tryptophan synthase.
    
  0.700
lamA
Putative urea carboxylase.
   
 
  0.685
DUR1,2
Urea amidolyase.
   
 
  0.685
rhiE-1
Rhamnogalacturonate lyase.
   
 0.682
gsa1
Glutathione synthetase.
   
 0.682
CTRI78_v009688
Aspartate aminotransferase.
   
  0.681
BNA2-0
Indoleamine 2,3-dioxygenase.
 
 
    0.638
cys-12
Cysteine synthase 2.
   
  0.560
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.