STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v010058Isoflavone reductase-like protein PCBER1. (322 aa)    
Predicted Functional Partners:
cef-1
Pre-mRNA-splicing factor cef-1.
    
   0.485
srp2
Pre-mRNA-splicing factor srp2.
    
 0.458
CTRI78_v007672
Uncharacterized protein.
    
 0.458
CTRI78_v008818
Uncharacterized protein.
    
 0.458
srp1-1
Pre-mRNA-splicing factor srp1.
    
 0.458
CTRI78_v004235
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
    
 0.446
rsd1
RNA-binding protein rsd1.
    
 
 0.432
afvA-1
NADPH dehydrogenase afvA.
   
    0.428
afvA-0
NADPH dehydrogenase afvA.
   
    0.410
plyE-4
Putative pectate lyase E.
    
 
 0.409
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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