STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYP8Peptidyl-prolyl cis-trans isomerase-like 2. (570 aa)    
Predicted Functional Partners:
prp17
Pre-mRNA-processing factor 17.
   
 0.992
SUB2-2
ATP-dependent RNA helicase SUB2.
    
  0.984
mtr4
ATP-dependent RNA helicase mtr4.
   
  0.984
cwf18
Pre-mRNA-splicing factor cwf18.
    
  0.983
cyp1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 
0.978
CYP10-1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  
 
0.978
CTRI78_v011653
Zinc finger protein.
   
 
  0.977
cwf14
Pre-mRNA-splicing factor cwf14.
    
  0.953
prp45
Pre-mRNA-processing protein 45.
    
 0.912
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.909
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.