STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v011330Putative N-acetyltransferase. (258 aa)    
Predicted Functional Partners:
naa35
N-alpha-acetyltransferase 35, NatC auxiliary subunit.
   
 0.948
sme1-1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.823
smb1
Small nuclear ribonucleoprotein-associated protein B.
    
  0.591
naa38-b
N-alpha-acetyltransferase 38-B, NatC auxiliary subunit.
    
  0.591
CTRI78_v002428
Uncharacterized protein.
    
  0.591
ARG1
Argininosuccinate synthase.
   
 
  0.521
CTRI78_v009688
Aspartate aminotransferase.
     
 0.519
CTRI78_v005884
Aspartate aminotransferase.
   
 
  0.479
CTRI78_v000671
Aspartate aminotransferase.
   
 
  0.479
pyrABCN
Protein pyrABCN.
   
 
  0.421
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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