STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cetn1Centrin-1. (180 aa)    
Predicted Functional Partners:
rhp41
DNA repair protein rhp41.
    
 0.962
rhp42
DNA repair protein rhp42.
    
 0.962
CTRI78_v004570
Dynein heavy chain.
    
 0.933
CTRI78_v000980
SAC3 family protein 1.
    
 
 0.932
CTRI78_v000981
Uncharacterized protein.
    
 
 0.932
rhp23
UV excision repair protein rhp23.
   
 0.923
CTRI78_v008426
PCI domain-containing protein.
    
 
 0.915
CTRI78_v001809
Uncharacterized protein.
    
   0.899
CTRI78_v003183
Protein CSN12-like protein.
    
 
 0.894
NUP152
Nucleoporin NUP152.
    
 
 0.867
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.