STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v009174Uncharacterized protein. (234 aa)    
Predicted Functional Partners:
CTRI78_v008460
Uncharacterized protein.
   
  0.614
CTRI78_v003002
Uncharacterized protein.
   
  0.614
CTRI78_v007236
Uncharacterized protein.
    
  0.566
MPH1
ATP-dependent DNA helicase MPH1.
    
 0.549
ssb1
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.544
NPL4
Nuclear protein localization protein 4.
    
  0.534
rad16
DNA repair protein rad16.
    
  0.530
ssb2
Replication factor A protein 2.
    
  0.502
CTRI78_v011272
Ribonuclease P protein subunit.
   
  0.482
CTRI78_v010542
Ribonuclease MRP protein subunit rmp1.
    
  0.479
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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