STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sos7Kinetochore protein Sos7. (280 aa)    
Predicted Functional Partners:
RL25
60S ribosomal protein L25.
   
 0.995
CTRI78_v008142
60S ribosomal protein L21-B.
   
 0.995
RPL14A
60S ribosomal protein L14-A.
  
 0.995
rpl-11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 0.995
CTRI78_v002476
60S ribosomal protein.
  
 0.995
RPL6B
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
  
 0.995
RPL31B
60S ribosomal protein L31-B.
   
 0.995
RPL34B
60S ribosomal protein L34-B.
  
 0.995
CTRI78_v011402
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
  
 0.995
rpl-5
60S ribosomal protein L5.
   
 0.994
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.