STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v010164F-box domain-containing protein. (431 aa)    
Predicted Functional Partners:
Rbx1
E3 ubiquitin-protein ligase RBX1.
    
 0.777
cul3
Cullin-3; Belongs to the cullin family.
    
 0.713
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.713
CTRI78_v003594
Uncharacterized protein.
   
 0.696
CTRI78_v004206
Uncharacterized protein.
   
 0.696
scon-3
E3 ubiquitin ligase complex SCF subunit scon-3; Belongs to the SKP1 family.
   
 0.696
elc1
Elongin-C; Belongs to the SKP1 family.
    
 0.676
CTRI78_v011354
Ubiquitin-like domain-containing protein.
    
 0.636
CTRI78_v000520
Ubiquitin-like domain-containing protein.
    
 0.636
TMC1
AN1-type zinc finger protein TMC1.
    
 0.636
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.