STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNA14mRNA 3'-end-processing protein RNA14. (1076 aa)    
Predicted Functional Partners:
Cstf2
Cleavage stimulation factor subunit 2.
   
 0.998
CTRI78_v003964
Zinc finger CCCH domain-containing protein 45.
    
 0.998
FIP1
Pre-mRNA polyadenylation factor FIP1.
   
 0.997
CTRI78_v003332
CID domain-containing protein.
    
 0.996
pta1
mRNA cleavage and polyadenylation specificity factor complex subunit pta1.
    
 0.993
paa-3
Protein cft1.
   
 0.986
paa-1
Polyadenylation factor subunit 2.
   
 0.985
pla1
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 0.983
YTH1
mRNA 3'-end-processing protein YTH1.
    
 0.979
cip2
RNA-binding post-transcriptional regulator cip2.
   
 0.976
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.