STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v008520Uncharacterized protein. (1566 aa)    
Predicted Functional Partners:
edc3
Enhancer of mRNA-decapping protein 3.
    
 
 0.610
CTRI78_v000136
Uncharacterized protein.
    
  0.605
CTRI78_v003942
BHLH domain-containing protein.
  
 
   0.500
CTRI78_v000562
Uncharacterized protein.
  
 
   0.484
CTRI78_v006967
Uncharacterized protein.
  
 
   0.478
sfc4
Transcription factor tau subunit sfc4.
    
  0.477
somA
Transcriptional activator somA.
  
 
   0.476
CTRI78_v010301
DUF4050 domain-containing protein.
  
 
  0.472
sfc1
Transcription factor tau subunit sfc1.
    
  0.472
pmt3
Ubiquitin-like protein pmt3/smt3.
    
  0.455
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.