STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xdhAPutative D-xylulose reductase A. (381 aa)    
Predicted Functional Partners:
xkiA
Putative D-xylulose kinase A.
  
 
 0.871
XYR1
NAD(P)H-dependent D-xylose reductase XYR1.
   
 0.861
xyl1
Putative NAD(P)H-dependent D-xylose reductase xyl1.
   
 0.834
ARD1
D-arabinitol dehydrogenase 1.
  
  
 
0.832
lcb1
Serine palmitoyltransferase 1.
  
 
 0.619
LCB2
Serine palmitoyltransferase 2.
  
 
 0.619
CTRI78_v000717
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.619
bioF
Putative 8-amino-7-oxononanoate synthase.
  
 
 0.619
lcb2
Serine palmitoyltransferase 2.
  
 
 0.619
CTRI78_v008270
Mannitol 2-dehydrogenase.
    
 0.577
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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