STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYP52Syntaxin-52. (278 aa)    
Predicted Functional Partners:
vti1
Vesicle transport v-SNARE protein vti1.
    
 0.994
CTRI78_v003616
Synaptobrevin-like protein ykt6; Belongs to the synaptobrevin family.
    
 0.994
pep12
Syntaxin pep12; Belongs to the syntaxin family.
    
 0.980
tlg2
t-SNARE affecting a late Golgi compartment protein 2; Belongs to the syntaxin family.
    
 0.969
CTRI78_v000466
Putative vesicular-fusion protein sec17-like protein.
    
 0.964
CTRI78_v009890
DUF2263 domain-containing protein.
    
 0.939
CTRI78_v006327
Vacuolar morphogenesis protein 7-like protein.
    
0.932
sec22
Protein transport protein sec22; Belongs to the synaptobrevin family.
    
 0.923
sed5
Integral membrane protein sed5.
    
 0.917
CTRI78_v008376
Vacuolar protein sorting-associated protein 51-like protein.
    
 0.908
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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