STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lapAPeptide hydrolase; Belongs to the peptidase M28 family. (368 aa)    
Predicted Functional Partners:
CTRI78_v012244
3'(2'),5'-bisphosphate nucleotidase.
 
      0.517
ucp7
UBA domain-containing protein 7.
    
  0.497
RSP5
E3 ubiquitin-protein ligase.
    
  0.468
rax2
Polarized growth protein rax2.
    
  0.468
CTRI78_v000511
Uncharacterized protein.
    
  0.468
APS2
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.450
CTRI78_v010018
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
 
  0.447
apm2
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
     
 0.445
CTRI78_v009579
3'(2'),5'-bisphosphate nucleotidase.
 
      0.441
clc1
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
  0.434
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.