STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v007625Uncharacterized protein. (168 aa)    
Predicted Functional Partners:
LAM1
3-hydroxyacyl-CoA dehydrogenase-like protein LAM1.
    
 0.919
CTRI78_v008494
Putative 1-alkyl-2-acetylglycerophosphocholine esterase.
    
 0.710
sec16
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 0.708
pic1
Inner centromere protein-related protein pic1.
   
 0.703
CTRI78_v007172
Uncharacterized protein.
   
 0.703
ctxA-0
Cholera enterotoxin subunit A.
    
  0.589
PTPRQ
Phosphatidylinositol phosphatase PTPRQ.
    
  0.589
eltA
Heat-labile enterotoxin A chain.
    
  0.589
ctxA-1
Cholera enterotoxin subunit A.
    
  0.589
CTRI78_v004767
Uncharacterized protein.
    
  0.589
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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