STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v007397Succinate dehydrogenase assembly factor 4. (151 aa)    
Predicted Functional Partners:
rad16
DNA repair protein rad16.
     
 0.684
rga4
Putative Rho-type GTPase-activating protein 4.
     
 0.642
CTRI78_v002655
Extracellular serine-rich protein.
     
 0.571
MUS81
Crossover junction endonuclease MUS81.
     
 0.482
CTRI78_v011168
Uncharacterized protein; Belongs to the complex I LYR family.
    
 
 0.454
yox1
MBF complex negative regulatory component yox1.
    
 
 0.454
CTRI78_v007997
Uncharacterized protein.
    
 
 0.454
CTRI78_v007908
Uncharacterized protein.
    
 
 0.454
CTRI78_v007549
Uncharacterized protein.
    
 
 0.454
CTRI78_v006683
Uncharacterized protein.
    
 
 0.454
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.