CTRI78_v007528 protein (Colletotrichum trifolii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTRI78_v007528

Putative FCP1-like proteiny domain-containing protein. (298 aa)

Predicted Functional Partners:

tfg1

0.939

ned1

0.858

tim23

0.851

TIM21

0.828

rpb4

0.820

tfg2

0.817

rpc2

0.817

CTRI78_v004695

0.803

rpb7

0.803

rpc40

0.802

Your Current Organism:

Colletotrichum trifolii

NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTRI78_v004695	CTRI78_v007528	A0A4R8RGG3	A0A4R8R6N5	Uncharacterized protein.	Putative FCP1-like proteiny domain-containing protein.	0.803
CTRI78_v004695	rpb4	A0A4R8RGG3	A0A4R8RI36	Uncharacterized protein.	DNA-directed RNA polymerase II subunit rpb4.	0.976
CTRI78_v004695	rpc2	A0A4R8RGG3	A0A4R8REW9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.949
CTRI78_v004695	rpc40	A0A4R8RGG3	A0A4R8REJ4	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.953
CTRI78_v004695	tfg1	A0A4R8RGG3	A0A4V3HW58	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha.	0.969
CTRI78_v004695	tfg2	A0A4R8RGG3	A0A4R8QVT3	Uncharacterized protein.	Transcription initiation factor IIF subunit beta.	0.965
CTRI78_v007528	CTRI78_v004695	A0A4R8R6N5	A0A4R8RGG3	Putative FCP1-like proteiny domain-containing protein.	Uncharacterized protein.	0.803
CTRI78_v007528	TIM21	A0A4R8R6N5	A0A4R8QT43	Putative FCP1-like proteiny domain-containing protein.	Mitochondrial import inner membrane translocase subunit TIM21.	0.828
CTRI78_v007528	ned1	A0A4R8R6N5	A0A4V3HWT6	Putative FCP1-like proteiny domain-containing protein.	Nuclear elongation and deformation protein 1.	0.858
CTRI78_v007528	rpb4	A0A4R8R6N5	A0A4R8RI36	Putative FCP1-like proteiny domain-containing protein.	DNA-directed RNA polymerase II subunit rpb4.	0.820
CTRI78_v007528	rpb7	A0A4R8R6N5	A0A4R8RU20	Putative FCP1-like proteiny domain-containing protein.	DNA-directed RNA polymerase II subunit rpb7.	0.803
CTRI78_v007528	rpc2	A0A4R8R6N5	A0A4R8REW9	Putative FCP1-like proteiny domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.817
CTRI78_v007528	rpc40	A0A4R8R6N5	A0A4R8REJ4	Putative FCP1-like proteiny domain-containing protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.802
CTRI78_v007528	tfg1	A0A4R8R6N5	A0A4V3HW58	Putative FCP1-like proteiny domain-containing protein.	Transcription initiation factor IIF subunit alpha.	0.939
CTRI78_v007528	tfg2	A0A4R8R6N5	A0A4R8QVT3	Putative FCP1-like proteiny domain-containing protein.	Transcription initiation factor IIF subunit beta.	0.817
CTRI78_v007528	tim23	A0A4R8R6N5	A0A4V3HV12	Putative FCP1-like proteiny domain-containing protein.	Mitochondrial import inner membrane translocase subunit tim23.	0.851
TIM21	CTRI78_v007528	A0A4R8QT43	A0A4R8R6N5	Mitochondrial import inner membrane translocase subunit TIM21.	Putative FCP1-like proteiny domain-containing protein.	0.828
TIM21	tim23	A0A4R8QT43	A0A4V3HV12	Mitochondrial import inner membrane translocase subunit TIM21.	Mitochondrial import inner membrane translocase subunit tim23.	0.982
ned1	CTRI78_v007528	A0A4V3HWT6	A0A4R8R6N5	Nuclear elongation and deformation protein 1.	Putative FCP1-like proteiny domain-containing protein.	0.858
rpb4	CTRI78_v004695	A0A4R8RI36	A0A4R8RGG3	DNA-directed RNA polymerase II subunit rpb4.	Uncharacterized protein.	0.976