STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgxCPutative galacturan 1,4-alpha-galacturonidase C; Belongs to the glycosyl hydrolase 28 family. (228 aa)    
Predicted Functional Partners:
acu-3
Isocitrate lyase.
   
  
 0.649
DPB2
DNA polymerase epsilon subunit B.
   
   0.547
gltA-1
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.541
CTRI78_v000291
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.541
gltA-0
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.541
CTRI78_v009071
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.541
RBG1
Ribosome-interacting GTPase 1.
    
   0.527
IRC3
Putative ATP-dependent helicase IRC3.
   
 
 0.493
aac
ADP,ATP carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.493
rgxB-1
Alpha-L-rhamnosidase rgxB; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.484
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.