tcpN-0 protein (Colletotrichum trifolii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tcpN-0

N-methyltransferase tcpN. (294 aa)

Predicted Functional Partners:

tsr1

0.577

CTRI78_v004518

0.573

RPS8B

0.563

RPS1

0.562

crp-15

0.562

crp-6

0.560

RPS2

0.551

CTRI78_v000558

0.551

RPS15

0.549

ltv1

0.547

Your Current Organism:

Colletotrichum trifolii

NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTRI78_v000558	CTRI78_v004518	A0A4R8RXV5	A0A4R8RGT0	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.958
CTRI78_v000558	RPS1	A0A4R8RXV5	A0A4R8PX06	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.995
CTRI78_v000558	RPS15	A0A4R8RXV5	A0A4V3HVV1	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.996
CTRI78_v000558	RPS2	A0A4R8RXV5	A0A4R8RM43	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.795
CTRI78_v000558	RPS8B	A0A4R8RXV5	A0A4R8RLM8	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.995
CTRI78_v000558	crp-15	A0A4R8RXV5	A0A4R8RFV3	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.994
CTRI78_v000558	crp-6	A0A4R8RXV5	A0A4R8RV31	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S27.	0.992
CTRI78_v000558	ltv1	A0A4R8RXV5	A0A4R8RUZ4	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Protein LTV1.	0.956
CTRI78_v000558	tcpN-0	A0A4R8RXV5	A0A4R8RAN2	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	N-methyltransferase tcpN.	0.551
CTRI78_v000558	tsr1	A0A4R8RXV5	A0A4R8RRL9	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosome biogenesis protein tsr1.	0.942
CTRI78_v004518	CTRI78_v000558	A0A4R8RGT0	A0A4R8RXV5	Uncharacterized protein.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.958
CTRI78_v004518	RPS1	A0A4R8RGT0	A0A4R8PX06	Uncharacterized protein.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.981
CTRI78_v004518	RPS15	A0A4R8RGT0	A0A4V3HVV1	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.995
CTRI78_v004518	RPS2	A0A4R8RGT0	A0A4R8RM43	Uncharacterized protein.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
CTRI78_v004518	RPS8B	A0A4R8RGT0	A0A4R8RLM8	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.986
CTRI78_v004518	crp-15	A0A4R8RGT0	A0A4R8RFV3	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
CTRI78_v004518	crp-6	A0A4R8RGT0	A0A4R8RV31	Uncharacterized protein.	40S ribosomal protein S27.	0.971
CTRI78_v004518	ltv1	A0A4R8RGT0	A0A4R8RUZ4	Uncharacterized protein.	Protein LTV1.	0.999
CTRI78_v004518	tcpN-0	A0A4R8RGT0	A0A4R8RAN2	Uncharacterized protein.	N-methyltransferase tcpN.	0.573
CTRI78_v004518	tsr1	A0A4R8RGT0	A0A4R8RRL9	Uncharacterized protein.	Ribosome biogenesis protein tsr1.	0.999