STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v006123Uncharacterized protein. (665 aa)    
Predicted Functional Partners:
TBL1Y
F-box-like/WD repeat-containing protein TBL1Y.
   
 0.870
taf5
Transcription initiation factor TFIID subunit 5.
   
 0.789
TAF12
Transcription initiation factor TFIID subunit 12.
    
 0.774
sgf73
SAGA-associated factor 73.
    
 0.773
NGG1
Chromatin-remodeling complexes subunit NGG1.
    
 0.769
TAF10
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.764
RPD3
Histone deacetylase RPD3.
    
 0.762
phd1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.762
TAF9
Transcription initiation factor TFIID subunit 9.
    
 0.754
TRA1
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
   
 0.752
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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