STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTRI78_v005598Uncharacterized protein. (259 aa)    
Predicted Functional Partners:
RVB1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.778
arp5
Actin-like protein arp5; Belongs to the actin family.
    
 0.773
ARP4
Actin-related protein 4; Belongs to the actin family.
   
 0.763
rad18
Postreplication repair E3 ubiquitin-protein ligase rad18.
   
 0.754
ies6
Chromatin-remodeling complex subunit ies6.
    
 0.753
UBC35
Ubiquitin-conjugating enzyme E2 35; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.745
spm2
Ubiquitin-conjugating enzyme spm2.
    
 0.742
CTRI78_v004738
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
  0.715
exo1
Exodeoxyribonuclease 1.
   
 0.712
pcn1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.697
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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