STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abh1Alpha-ketoglutarate-dependent dioxygenase abh1. (345 aa)    
Predicted Functional Partners:
rmt-1
Multifunctional methyltransferase subunit trm112.
   
 
 0.554
CTRI78_v000140
Alkylated DNA repair protein ALKBH8-like protein.
   
  
 0.529
CTRI78_v003964
Zinc finger CCCH domain-containing protein 45.
      
 0.508
CTRI78_v007376
Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 6.
   
  
 0.488
trm6
tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6.
   
  
 0.464
CTRI78_v005259
Uncharacterized protein; Belongs to the MT-A70-like family.
   
  
 0.462
MTQ2-1
ERF1 methyltransferase catalytic subunit MTQ2.
      
 0.448
trm4b
Multisite-specific tRNA:(Cytosine-C(5))-methyltransferase trm4b; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.438
CTRI78_v011665
Uncharacterized protein.
  
  
 0.437
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
   
  
 0.423
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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