STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sst2AMSH-like protease sst2. (553 aa)    
Predicted Functional Partners:
ATG13
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
    
 0.997
crp-79
Ubiquitin-60S ribosomal protein L40.
   
 0.969
rpn7
Putative 26S proteasome regulatory subunit rpn7.
   
 0.937
rpn9
Putative 26S proteasome regulatory subunit rpn9.
   
 0.934
CTRI78_v011354
Ubiquitin-like domain-containing protein.
    
 0.933
CTRI78_v000520
Ubiquitin-like domain-containing protein.
    
 0.933
TMC1
AN1-type zinc finger protein TMC1.
    
 0.933
radR-1
Transcription factor radR.
   
 0.930
CTRI78_v011763
CIA30 domain-containing protein.
   
 0.930
ubi::crp-6
Ubiquitin-40S ribosomal protein S27a.
   
 0.930
Your Current Organism:
Colletotrichum trifolii
NCBI taxonomy Id: 5466
Other names: BBA 70709, BPI 399624, C. trifolii, CBS 158.83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.